PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N03067.1.p | ||||||||
Common Name | MIMGU_mgv1a014878mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19500.2 Da PI: 7.4126 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 64 | 99 | 15 | 55 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++++ L++l+ + +K + a++L +++eYI+ Lq Migut.N03067.1.p 64 KVSERISALQQLVSPY-----GKTDTASVLLETMEYIRFLQ 99 78899********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.02 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-4 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-11 | 57 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.52E-6 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.0E-9 | 63 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MHAVFCQPRE SNFLGTDSDL LMERREMMQH KRGPISLEQN SFTDLMPKRL KTDVPLSTKE 60 KKEKVSERIS ALQQLVSPYG KTDTASVLLE TMEYIRFLQE QVKVLSAPYL YSTPTQSQEE 120 EQSSLRGKGL CLVPVSLTVG VGSSNGADIW APVKTGPQYS RRTVSDEAAS AITQS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N03067.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839065.1 | 1e-105 | PREDICTED: transcription factor bHLH113-like | ||||
Refseq | XP_012839066.1 | 1e-105 | PREDICTED: transcription factor bHLH113-like | ||||
Swissprot | Q7XJU2 | 9e-53 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A022RAC5 | 1e-126 | A0A022RAC5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10428 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 4e-55 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N03067.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|