PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N02926.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 15027.9 Da PI: 6.2638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50 | 7.5e-16 | 28 | 71 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 ++y GVr+++ +gr++AeIr p + r++lg+f+taeeAa a++ Migut.N02926.1.p 28 TKYLGVRRRP-WGRFAAEIRNP-----HtkERHWLGTFDTAEEAAVAYDI 71 699*******.**********7.....336******************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-26 | 28 | 86 | No hit | No description |
Pfam | PF00847 | 4.0E-9 | 28 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.521 | 29 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-28 | 29 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.1E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MELIPDSDKQ HQMIRNPAGM SKSSRSSTKY LGVRRRPWGR FAAEIRNPHT KERHWLGTFD 60 TAEEAAVAYD ISSISFSGVE KARTNFVYPF LGSPPPPPAV EESGLKSTEE DDESVLIASI 120 LQSFSQSNGL DKMLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 29 | 93 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N02926.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838243.1 | 1e-87 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A022RCA3 | 8e-53 | A0A022RCA3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12890.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N02926.1.p |