PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02799.1.p | ||||||||
Common Name | LOC105959281, MIMGU_mgv1a008799mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 363aa MW: 39140.9 Da PI: 6.1854 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 2.9e-10 | 209 | 257 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq Migut.N02799.1.p 209 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 257 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-17 | 204 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-11 | 204 | 261 | No hit | No description |
PROSITE profile | PS50888 | 15.472 | 206 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 206 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-7 | 209 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 212 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGSEEIGQRD SISRIMGSSD SMSENVAGMS ESFLVDHFHG SCWDPMISDN LGNSSIIPQN 60 EFVNPHYLVG NSSHLAHYTS DLGLVLDMVP KIPSFGSGSF SEMANSSFGQ INESGCHSNL 120 EDGLFGASLN GKRKRKVSPS VGGSCNKNVE EEKLKNQKTG NTCEFPKEDE KKNTGTKQGV 180 KQAKDGSNGA EPSKEDYILV RAKRGQATNS HSLAERVRRE RISERMRLLQ ELVPGCNKIT 240 GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNVDIDR ILSKDLLHTR GGNATELGVG 300 PGFSPSHAFP GLLNGYAGPP PPFHPLPPNL WNSDLQSILQ MGFDPSPTGT GLGANGLSKT 360 EP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02799.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF397568 | 1e-108 | EF397568.1 Sesamum indicum basic helix-loop-helix protein (bHLH) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838797.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
TrEMBL | A0A022R8T2 | 0.0 | A0A022R8T2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5250 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02799.1.p |
Entrez Gene | 105959281 |