PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02718.1.p
Common NameLOC105959221, MIMGU_mgv1a021807mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 389aa    MW: 43235.1 Da    PI: 7.9755
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02718.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.9e-36251172103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll
  Migut.N02718.1.p  25 FLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLL 108
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  Migut.N02718.1.p 109 CEIHRRKTS 117
                       ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MALTLDNCDG IMLSLDSQKS VPAPFLTKTY QLVDDPATDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPQ  120
VSHQNHHLHH HHFAGGQSYN SSFPNYPSRA DSISPPDSSD EYIHHQQPIN NNNNWCDSPP  180
PLSSPTGGGV SVVTNPNCSG GGGYSSAVSL TALSEDNERL RRNNNMLVSE LAHMRKLYND  240
IIYFVQNHVK PVAPSNSYHS SLFLCNTSSS SPTTAAAAIN GGSSILQKPL NQLIGSTYHH  300
HHQQTAATTN PNKVTNNNNN GLFGSLNINS SPSSKIVEDR TKLFGVPLIS SKKRLHPEFK  360
SSMDTTNKTR LVLEKDDLGF NLMPPSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02718.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838730.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-110HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A022R7570.0A0A022R757_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-95heat shock transcription factor B4