PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02592.1.p
Common NameLOC105959130, MIMGU_mgv1a002381mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 682aa    MW: 74766 Da    PI: 7.358
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02592.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24115216199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +   +t++d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +
  Migut.N02592.1.p 115 FPKTLTQSDANNGGGFSVPRYCAETIfppldytADPPVQ--NVTVRDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--R 203
                       679****************************98666667..6999*********************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                         ++ l+v+++r+
  Migut.N02592.1.p 204 AVNGDLCVGIRRA 216
                       478888****997 PP
2Auxin_resp104.41.4e-34280361383
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a++ ++FevvY+Pras+ eF+vk+++v++a++++++ Gm+fkm fet+dss+ ++ +Gtv++v+ +dpvrWpnS+W++L+
  Migut.N02592.1.p 280 FLAASCQPFEVVYCPRASAMEFCVKASSVNAAMRIHWCSGMKFKMPFETDDSSRVSWfMGTVASVQFVDPVRWPNSPWKLLQ 361
                       568899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-37106223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-29110232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-19114211No hitNo description
PROSITE profilePS5086313.098115217IPR003340B3 DNA binding domain
SMARTSM010198.4E-23115217IPR003340B3 DNA binding domain
PfamPF023623.0E-22115216IPR003340B3 DNA binding domain
PfamPF065079.6E-29280361IPR010525Auxin response factor
PROSITE profilePS5174515.478568649IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKEIVEKSLD SELWHACAGC MVKMPPVNSK VFYFPQGHAE HSLASVDFGA LPMIPPMILC  60
RVSSVKYLAD HETDEVYAKI GLIPVGNNER VSYDDEDGIF GRINKSESGE KAASFPKTLT  120
QSDANNGGGF SVPRYCAETI FPPLDYTADP PVQNVTVRDV HGETWKFRHI YRGTPRRHLL  180
TTGWSTFVNQ KKLVAGDSIV FMRAVNGDLC VGIRRARRGG GVSGNEYSSS VWNYGGGGNL  240
GVVSGFLEDE NNKLMHRSGG VGKSREKGRV SPESVVEAAF LAASCQPFEV VYCPRASAME  300
FCVKASSVNA AMRIHWCSGM KFKMPFETDD SSRVSWFMGT VASVQFVDPV RWPNSPWKLL  360
QVTWDEPDLL QNVKCVSPWL VELASNMPAL HLSPFSPPRK KLCLPLHHPN LPLDGRFPLP  420
SFSGNPLGPS SSLRCLPDNN ITLGIQGARH AQIGVPLTDL HFSNKQLQTG ILPPPSGNLP  480
LLEYPRANVL DRNEDGNDNV SCLLSMGNSN KKKSDDETCG AKKTPLFVLF GQPIHTEKQM  540
SYDRPGDAFS RVAFGQNASG GTKSLSTDFL CKVFLESEEV GHSVDLSALG SYKELYKKLE  600
DMFRIDRSEI VGHLFYRDDA SGAAKQVGEE PFSEFVKATK TLRILMKPGS DDTERKLVTG  660
LPTSELGRNS SNQTGALSIF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80938251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02592.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838622.10.0PREDICTED: auxin response factor 18-like
RefseqXP_012838623.10.0PREDICTED: auxin response factor 18-like
RefseqXP_012838624.10.0PREDICTED: auxin response factor 18-like
RefseqXP_012838625.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A022RB610.0A0A022RB61_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]