PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02371.1.p | ||||||||
Common Name | MIMGU_mgv1a006505mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SRS | ||||||||
Protein Properties | Length: 378aa MW: 38516.1 Da PI: 7.8023 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 217.5 | 2.9e-67 | 149 | 310 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssa 94 +gta+CqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpaa+rrerq + +++ a +s+ +++ +k++r +++++++s+t++s++ Migut.N02371.1.p 149 MGTATCQDCGNQAKKDCPHRRCRTCCKSRGYDCSTHVKSTWVPAARRRERQLIGSDPAAAAGSSQsTNSGTKKPRLGGASQTTTASHTSTSNN 241 7899**********************************************9877666655555443888999999999999************ PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++++t+s lP +v+++avf+cvrv+++ddge+e+aYq++v igGhvfkG+LydqG+e Migut.N02371.1.p 242 TPPRSFDTTSshqdgsykesLPGQVRAPAVFKCVRVTALDDGEDEYAYQAVVRIGGHVFKGFLYDQGVE 310 *******9999********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-62 | 151 | 310 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.7E-27 | 153 | 195 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.0E-29 | 262 | 309 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MWSSAAAASR HMNCGLPPEF FFVAPASSFQ HHHHSETAAG GGGGGGAATI NFDHHSLGVG 60 VIPLLTATPC IPQTNISGGA AADEELLNNA RNRGGGGGGG MQLWQHHQNQ AQNSSAYLLK 120 PMSLEHTNLL ETGSNNNNGG IGGGSSSSMG TATCQDCGNQ AKKDCPHRRC RTCCKSRGYD 180 CSTHVKSTWV PAARRRERQL IGSDPAAAAG SSQSTNSGTK KPRLGGASQT TTASHTSTSN 240 NTPPRSFDTT SSHQDGSYKE SLPGQVRAPA VFKCVRVTAL DDGEDEYAYQ AVVRIGGHVF 300 KGFLYDQGVE GRDALPNLSE LHLGGGGGGS AAGGSGGGGG RNNVTTAAVI DHSDHMYAAA 360 SGSGLLGGSG YGGNPIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02371.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838439.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 2e-77 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A022R8A6 | 0.0 | A0A022R8A6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7655 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 4e-71 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02371.1.p |
Publications ? help Back to Top | |||
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