PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Migut.N02298.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 168aa MW: 18677.1 Da PI: 7.3256

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02298.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	2e-42	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca Ck+lrr+Ca+d v+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++ Migut.N02298.1.p 13 PCAECKILRRRCAADRVFAPYFPADDPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQTQ 105 7****************************************************************************************** PP DUF260 94 lallkee 100 lal+++e Migut.N02298.1.p 106 LALAQAE 112 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.416	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-42	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKDSSRKQGA ASPCAECKIL RRRCAADRVF APYFPADDPH KFASVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID MLQTQLALAQ AEVVHMRMRH 120 VTNSPENASP SSRSHMSQLS HQAKSLFSMD MVDQHHHNME EDDSLWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	9	125	7	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	9	125	7	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02298.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012828930.1	1e-123	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-68	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2G9HN48	5e-90	A0A2G9HN48_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-71	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Migut.N02298.1.p