PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 224aa MW: 23766.1 Da PI: 6.8884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01640.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.4	6.8e-40	17	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkCa++Cv++pyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+a Migut.N01640.1.p 17 PCGACKFLRRKCAAGCVFSPYFESEQgAAHFAAVHKVFGASNVSKLLLHIPVQKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 109 7*********************9989************************************************************* PP DUF260 93 elallkee 100 el++l+++ Migut.N01640.1.p 110 ELSYLQAH 117 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.819	16	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-39	17	115	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSASNVTGTS AAAAGGPCGA CKFLRRKCAA GCVFSPYFES EQGAAHFAAV HKVFGASNVS 60 KLLLHIPVQK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE LSYLQAHLAA 120 FEIPTPPPAL PPPLTPPPPA LLSISDLPTV SAVPSTYNHD LSSIFDSTLH PTWTMNHQCR 180 ELDTCHFSTA AGAPPEVHSS AVGGLHELDA PPYLQKSRSN FEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	13	131	7	127	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	13	131	7	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01640.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012845593.1	1e-163	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	8e-69	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A022QVN0	1e-162	A0A022QVN0_ERYGU; Uncharacterized protein
STRING	Migut.N01640.1.p	1e-163	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-70	LBD family protein

Link Out ? help Back to Top
Phytozome	Migut.N01640.1.p
Entrez Gene	105965576

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]