PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01539.1.p
Common NameLOC105956331, MIMGU_mgv1a003886mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 559aa    MW: 61936.9 Da    PI: 7.1825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01539.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13405451455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Migut.N01539.1.p 405 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 451
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5252240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.704401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-18404466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-14404455No hitNo description
PfamPF000102.8E-10405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18405463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MTIEFGMGGV VWNAEDKAMA AAVLGTKAFE YLMSNFVTAQ SSLMSMANNE NLQNKLSDLV  60
ERPNSSNFSW NYAIFWQLSK SKTGDLVLGW GDGCCREPRE EEDSEVARIL NMRLEDESQQ  120
RMRKRVLQKL HMSSGGTDED SYAFGLDKVT DAEMFFLASM YFSFSRGEGG PGRCLGSGKH  180
VWFSDTLKSS TDYCFRSFLA KLAGVRTVAL IPTDIGVVEL GSVKCIPESL ELVNLIRSSF  240
SSLSGLVRAK KAAAVAVTTD NKKDTQVVPK IFGQDMYSNH TQFRQKNVVG KVEDNNRLPF  300
TNTQNGFLGW TQYGNVKPVN PPSNNLHELV NMAKKEYQFS NFQTQKKPAQ MQIDFGGATS  360
RTVISRPRSA ESEHSDVDEG VGISGDNRSR KRGRKPANGR EEALNHVEAE RQRREKLNQR  420
FYALRAVVPN ISKMDKASLL GDAIAYITEL QKKLKDMESE DERVITAPNT KIQDCAPRID  480
IETGCDEVTV KVICPLDSHP VSRVVEAIKN ANATIVDANF AAGSEEVFHT FVVKSSQGSE  540
QLTKDKLIEA FSGESKSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-28399460263Transcription factor MYC2
5gnj_B8e-28399460263Transcription factor MYC2
5gnj_E8e-28399460263Transcription factor MYC2
5gnj_F8e-28399460263Transcription factor MYC2
5gnj_G8e-28399460263Transcription factor MYC2
5gnj_I8e-28399460263Transcription factor MYC2
5gnj_M8e-28399460263Transcription factor MYC2
5gnj_N8e-28399460263Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01539.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835634.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A022RFU90.0A0A022RFU9_ERYGU; Uncharacterized protein
STRINGMigut.N01539.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]