PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01518.2.p | ||||||||
Common Name | LOC105956316, MIMGU_mgv1a001704mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 771aa MW: 84725.2 Da PI: 6.5428 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.7e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++++ q++s+ qk+ Migut.N01518.2.p 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKSAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.96E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.691 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.7E-15 | 22 | 71 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 23 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.83E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MDHYSSGEDL LIKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKSAVQ 60 IRSHAQKFFT KLEKEATVKG VPVGHAIDIE IPPPRPKRKP SNPYPRKTSV GAPTSHVTVK 120 DGKISNPLSS KITIEKESEE PCDDGKLENS NEYHETDNWS EAYTLLKTAP CASPSSTNKS 180 SLSMSDAPGK SCTFRQYIPL PKEAGNQDEV VVSKVTIETK GLAAEKCDDK KYFQDKAPSN 240 ISNVVNSYLS HEKYVHSKRI AELKKSENAL PIADVLSSQN YPRHVNVHIV DGIPGASAQT 300 ISPDGSCTDS TFHQMGGVYG HQNLFMKPAE HYSNASGSSV HQSFPSYHPI FTPNQNQDDY 360 LHMSSTFSSL IVSALSQNLA AYAAASFTAS LWPCVNMEAP IESSDGAFQS RPLSSVPSMG 420 SIAAATVAAA TAWWTAHGLL PLPAQFLPGF TCSPASVSAT PMESSEGRVI NSEKRENTPN 480 PALGGQQLEP DCSKALHEQH SASKSPMLSS SDSEASESAK LNVGLATAET TKVSETDELD 540 NDVNKSKNQK LVDRSSCGSN TSSSSDVETD ALEKHAKGTE ENHMNGEEEP EEVDANHPLG 600 DPFNRRCRSI ININDSWKEV SEGGRLAFRA LFSRERLPQS FSPPHDVKNK GEKNYTENEQ 660 KKDESGVRLD LNAKTWESCW QKQGVENNGS LIGENKEEGL LDLGLGLAAA NKLKAPRRTG 720 FKPYKRCAME AKESRMAPNS HNEEKCPKRL RMDEQEDHAS STKLFSLYPI * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01518.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835616.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
Refseq | XP_012835617.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
TrEMBL | A0A022REQ0 | 0.0 | A0A022REQ0_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 3e-44 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01518.2.p |
Entrez Gene | 105956316 |