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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Migut.N01471.1.p |
| Common Name | MIMGU_mgv1a020553mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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| Family |
C3H |
| Protein Properties |
Length: 346aa MW: 38609.6 Da PI: 7.0919 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.N01471.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.8 | 8.9e-09 | 30 | 50 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C f+++ G C yG+rC++ H+
Migut.N01471.1.p 30 ICTFYQK-GLCAYGSRCRYDHV 50
7******.*************7 PP
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| 2 | zf-CCCH | 18.6 | 3.2e-06 | 126 | 148 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G+C++G +C+ +Hg
Migut.N01471.1.p 126 RPICS-FAAAGECPHGLNCPHIHG 148
78999.**************9998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.15 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.432 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-6 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.352 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.002 | 26 | 51 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-5 | 28 | 49 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.8E-6 | 30 | 50 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 30 | 49 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.239 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0056 | 124 | 149 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 5.89E-13 | 179 | 256 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 3.2E-10 | 187 | 251 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 3.80E-4 | 191 | 251 | No hit | No description |
| SMART | SM00184 | 1.8E-7 | 192 | 249 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 12.357 | 192 | 250 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 2.2E-7 | 192 | 249 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 216 | 225 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.25 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.765 | 279 | 308 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
VLCKFFAHGA CLKGEHCEYS HDWKAPPNNI CTFYQKGLCA YGSRCRYDHV KVSRLQSPDV 60
SSSADVSSAS EFSSGTATAV SADRSASTRP FYPPSQPAWE ENFVSSDTLL TEDDFVDVGG 120
VDPASRPICS FAAAGECPHG LNCPHIHGDL CPTCKKHCLH PFRPQEREEH MKICEKRQRH 180
LEALTHSQEI ECSVCLENVL SKPTPAERKF GILSECDHPF CISCIRNWRS SSSASGMDPH 240
SALRSCPICR KLSYFVIPSV IWYSSKEEKH EIVETYKAKL KSIDCKHFDF GNGSCPFGTS 300
CFYKHMYGDG RHEEVVIRHL GAEDGNTVIA KDIRLSDFLS NMRIR*
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