PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 407aa MW: 45789.7 Da PI: 5.7334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01420.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.2e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k Migut.N01420.1.p 54 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 109 688999***********************************************999 PP
2	START	103.7	3.2e-33	247	403	1	137
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela++a+++lvk+a+ ++p W +s e +n +e+ ++f++ + + +ea+r++g+v+ + lve+l+d++ +W e+++ + Migut.N01420.1.p 247 ELALAAMDDLVKMAQTDDPIWIRSNieggrEVLNLEEYSRSFSPCIGmkpngFVTEASRETGMVIINGLALVETLMDSN-KWAEMFPciiaRT 338 5899*******************9999999999999999998888999*************************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS-- CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkpp 137 +t++vis+g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++++ Migut.N01420.1.p 339 TTTDVISNGmggtrnGALQLMYAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDAIRENS 403 ********************************************************9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-21	41	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-21	46	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	51	111	IPR001356	Homeobox domain
SMART	SM00389	1.9E-19	52	115	IPR001356	Homeobox domain
CDD	cd00086	1.95E-18	54	111	No hit	No description
Pfam	PF00046	6.4E-19	54	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	25.045	238	407	IPR002913	START domain
SuperFamily	SSF55961	3.11E-17	240	397	No hit	No description
CDD	cd08875	9.51E-79	242	407	No hit	No description
Pfam	PF01852	3.1E-26	247	403	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MEGQGEVRIE ENYESSNVNG RRSREDEHES RSGSDKRGGG SGDDLDAADK PPRKKRYHRH 60 TPQQIQELES LFKECPHPDE KQRLELSKRL SLETRQVKFW FQNRRTQMKT QIERHENSIL 120 RQENDKLRAE NMSIRDAMRN PICTNCGGPA MIGEISIEEQ HLRIENARLK DELDRVCSLA 180 GKFLGRPVSS NGPPMPNSSL ELGFSLPMGP HDFVNSPLPV MQPNNNNNNP IKGTTIERSL 240 ERSMYLELAL AAMDDLVKMA QTDDPIWIRS NIEGGREVLN LEEYSRSFSP CIGMKPNGFV 300 TEASRETGMV IINGLALVET LMDSNKWAEM FPCIIARTTT TDVISNGMGG TRNGALQLMY 360 AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDAIR ENSGGAP

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MEGQGEVRIE ENYESSNVNG RRSREDEHES RSGSDKRGGG SGDDLDAADK PPRKKRYHRH  60
TPQQIQELES LFKECPHPDE KQRLELSKRL SLETRQVKFW FQNRRTQMKT QIERHENSIL  120
RQENDKLRAE NMSIRDAMRN PICTNCGGPA MIGEISIEEQ HLRIENARLK DELDRVCSLA  180
GKFLGRPVSS NGPPMPNSSL ELGFSLPMGP HDFVNSPLPV MQPNNNNNNP IKGTTIERSL  240
ERSMYLELAL AAMDDLVKMA QTDDPIWIRS NIEGGREVLN LEEYSRSFSP CIGMKPNGFV  300
TEASRETGMV IINGLALVET LMDSNKWAEM FPCIIARTTT TDVISNGMGG TRNGALQLMY  360
AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDAIR ENSGGAP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01420.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840139.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A022R5Y7	0.0	A0A022R5Y7_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-180	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.N01420.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]