PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01353.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 326aa    MW: 35228.9 Da    PI: 6.8846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01353.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013249269121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       +kC++C+++Fs+   L  H+r
  Migut.N01353.1.p 249 HKCNICSRVFSSGQALGGHMR 269
                       79************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6682109IPR007087Zinc finger, C2H2
SMARTSM003550.1682104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.7E-683104No hitNo description
PfamPF139126.7E-684106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00184104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-6175202No hitNo description
PfamPF139124.6E-9179203IPR007087Zinc finger, C2H2
SMARTSM003552.5180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576672.79E-6247275No hitNo description
PfamPF139129.1E-13249273IPR007087Zinc finger, C2H2
SMARTSM003550.014249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325249276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001249272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
METNHSSSIP SDFRPPTLSS GHVIGEPSSS SSPFHPTTLI FNPRHQTKKK RSKFIRIDAT  60
AAGLHSTKPT RKPDPSAPKI TPPCTECGRK FWSSKALFGH MRCHPERQWR GINPPPNFRR  120
TAAETISDER DYLYSSSLLT EEDHEVAACL LMLAHSAAAP PPEYSDSAGQ HIVDGNCGRF  180
ECASCKKVFG SHQALGGHRA SHKNVKGCYA ITRNNNSTAA GGGDHHQEQE EGEEELEWYS  240
EDNNNNGGHK CNICSRVFSS GQALGGHMRC HWDKEEARVF GGFDLNLSGT AGGATTTPPP  300
PPPLPPVVDD DGDASSPYCS GMALD*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01353.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833710.10.0PREDICTED: zinc finger protein ZAT3
SwissprotO654993e-77ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A022RKG90.0A0A022RKG9_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA638556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-78C2H2-like zinc finger protein