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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Migut.N01298.1.p |
| Common Name | LOC105954616, MIMGU_mgv1a012572mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 247aa MW: 27889.9 Da PI: 10.0612 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.N01298.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 35.5 | 3.3e-11 | 12 | 90 | 16 | 93 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...s 93
++++++ + ++ + +e++a+++er+ a+se+ka ++e + a +qrd a+ ern+al erdn+++al+++e ++ s
Migut.N01298.1.p 12 EQNAFN--TTAKIGILFEEKEAALKERDKAISETKAILKEMEFAITQRDLAIIERNNALKERDNAIAALQFHESNMRnpiS 90
444444..6667777788******************************************************999774432 PP
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| 2 | GAGA_bind | 238.7 | 4.2e-73 | 97 | 245 | 150 | 300 |
GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
k++++ k + ++ +kk+kk +e+ +++v++ skae++++dl +l+ + +Dest+PvPvCsCtG+ rqCYkWG GGWqS+CCtt++S
Migut.N01298.1.p 97 AKASRNVKIKSSRSSKKAKKMGEDLNRQVTTY----GSKAEWEDQDLgsTLQMIRFDESTMPVPVCSCTGVARQCYKWGKGGWQSSCCTTALS 185
22222233333333344455444554444444....499********777******************************************* PP
GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
yPLP+++++r+aR++grKmS+ +f++lL +L + G+dls p+DLk +WAkHGtn+++ti
Migut.N01298.1.p 186 EYPLPQMPNKRHARMGGRKMSGTVFSRLLTRLGTAGHDLSVPLDLKIYWAKHGTNRYITI 245
***********************************************************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MWNMMQYQHF SEQNAFNTTA KIGILFEEKE AALKERDKAI SETKAILKEM EFAITQRDLA 60
IIERNNALKE RDNAIAALQF HESNMRNPIS EVPTSRAKAS RNVKIKSSRS SKKAKKMGED 120
LNRQVTTYGS KAEWEDQDLG STLQMIRFDE STMPVPVCSC TGVARQCYKW GKGGWQSSCC 180
TTALSEYPLP QMPNKRHARM GGRKMSGTVF SRLLTRLGTA GHDLSVPLDL KIYWAKHGTN 240
RYITIT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
