PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01290.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 292aa    MW: 33558.2 Da    PI: 8.7102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.5e-141150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i+ +  r+vtf kR++g++ K +E  +LCd+ +++ii+++
  Migut.N01290.1.p 11 ISKEKSRNVTFKKRKEGLIRKMHEFATLCDVSACMIIYAP 50
                      888999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.241149IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-17154IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-13160IPR002100Transcription factor, MADS-box
CDDcd002661.19E-20287No hitNo description
PRINTSPR004044.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAKLNMEL ISKEKSRNVT FKKRKEGLIR KMHEFATLCD VSACMIIYAP PKQPNAAADA  60
DDQVPEIWPE NTDQVRRIID IYKSKKKDSG NKTFGLPDFF HDRKRKIDDE LAKMRKKNRE  120
ANYPTSADNL NLNEAGLREF GARLSVRAQY VKSRIELLRR DKDGLIGMGL INNHHPHPHY  180
PIEANIPVFN PNINHHHQEL HCVSDNSMMN LLMNDDDDDR FLQFGNPPPY QRQFFPGGGG  240
MMEPILFYGP AAGVYPGMAA PPQMQFPKME NYDGGQEDFI QYQMNPRSRY Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
184105KKKDSGNKTFGLPDFFHDRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833642.10.0PREDICTED: agamous-like MADS-box protein AGL86
TrEMBLA0A022RL000.0A0A022RL00_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-16M-type_MADS family protein