PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01243.1.p | ||||||||
Common Name | LOC105952009, MIMGU_mgv1a017293mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9348.36 Da PI: 5.9058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4e-11 | 13 | 59 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ E + + +a +++ ++ +W+ +ar +g +Rt +++k ++ + Migut.N01243.1.p 13 KWTAKENKDFEEALAEFDKDtpeRWSNVARAVG-TRTVEEVKKHYEVL 59 8********************************.***********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.909 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 13 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-7 | 13 | 60 | No hit | No description |
Pfam | PF00249 | 2.8E-9 | 13 | 59 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MASSSANRDS GRKWTAKENK DFEEALAEFD KDTPERWSNV ARAVGTRTVE EVKKHYEVLL 60 EDLNKIESGK VPLPNYKTTC GSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-35 | 1 | 82 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01243.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830961.1 | 1e-55 | PREDICTED: transcription factor RADIALIS-like | ||||
Swissprot | Q58FS3 | 6e-35 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A022RUK5 | 3e-54 | A0A022RUK5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-33 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01243.1.p |
Entrez Gene | 105952009 |
Publications ? help Back to Top | |||
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