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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01146.1.p | ||||||||
Common Name | MIMGU_mgv1a020243mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 17257.4 Da PI: 8.9305 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+Fs+ L H tH Migut.N01146.1.p 61 HECSICHKVFSTGQALGGHKTTH 83 78**********99999998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.12E-6 | 58 | 86 | No hit | No description |
Pfam | PF13912 | 9.3E-13 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.224 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKLKIIPPRR PDIVTDDEIV AVEVLMMLAS GKDFSSPPSD SQTTTNRSDA ASDQNRSGRA 60 HECSICHKVF STGQALGGHK TTHRNTIKFK SSHGGPPCNS PTPIPAPKTV ISINDNISLK 120 KRKRNNNSDS SDEAASTWVA RSIDLNLPPE PEFSPSAAII * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01146.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835316.1 | 1e-114 | PREDICTED: zinc finger protein AZF1-like | ||||
TrEMBL | A0A022RGD3 | 1e-111 | A0A022RGD3_ERYGU; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 4e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01146.1.p |