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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.N01110.1.p |
Common Name | MIMGU_mgv1a021703mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 219aa MW: 25265.9 Da PI: 9.8726 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.N01110.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.2 | 1e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++nrqvtfskRrng+lKKA+ELS+LCd ev +iifsstgkl+ +ss
Migut.N01110.1.p 10 RIDNSTNRQVTFSKRRNGLLKKAKELSILCDSEVGLIIFSSTGKLHHFSS 59
8***********************************************96 PP
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2 | K-box | 67.7 | 4e-23 | 82 | 170 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+++ + ++ e+a+L+++++ Lq++ ++llGe+++ Ls+++L++Le+qLe s k iR kK++ll+++i+el k + ++++n +L+kk
Migut.N01110.1.p 82 PTSEIKFWEMEAANLRQQLQYLQESYKQLLGEQISGLSIENLHNLENQLEISSKGIRMKKEQLLTDEINELNWKGNLVHRDNIELHKKA 170
578899********************************************************************************995 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.09E-44 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-21 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.703 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSTNRQVT FSKRRNGLLK KAKELSILCD SEVGLIIFSS TGKLHHFSST 60 SMKCVMERYN KAKEEHYHLM NPTSEIKFWE MEAANLRQQL QYLQESYKQL LGEQISGLSI 120 ENLHNLENQL EISSKGIRMK KEQLLTDEIN ELNWKGNLVH RDNIELHKKA NLVDQANAKF 180 HNKASTAVES CLKTYIRKEC GNNAVTDIVF DKNRVNRF*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |