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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.N00963.1.p |
Common Name | MIMGU_mgv1a024753mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
NAC |
Protein Properties |
Length: 165aa MW: 18583.8 Da PI: 9.4725 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.N00963.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 94 | 2.4e-29 | 1 | 88 | 7 | 95 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
FhPtdeel+++y++ kv + ++ + +i+evd++++e w+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkat kd+ev+s+
Migut.N00963.1.p 1 FHPTDEELITFYIASKVFNGTFCA-VHIAEVDLNRCESWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATEKDREVYSS 88
9********************888.67***************8888899**************************************94 PP
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2 | NAM | 60.7 | 4.6e-19 | 93 | 154 | 79 | 128 |
NAM 79 ksgyWkatgkdkevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
+gyWkat kd+ev+s+ +g+l g+kktLvfykgrap+ ekt+Wvmheyrl
Migut.N00963.1.p 93 GAGYWKATEKDREVYSStsvgggggsstnGGALLGMKKTLVFYKGRAPRREKTKWVMHEYRL 154
58**************98888777666655566***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 165 aa
Download sequence Send
to blast |
FHPTDEELIT FYIASKVFNG TFCAVHIAEV DLNRCESWEL PDVAKMGERE WYFFSLRDRK 60 YPTGLRTNRA TGAGYWKATE KDREVYSSTS VGGAGYWKAT EKDREVYSST SVGGGGGSST 120 NGGALLGMKK TLVFYKGRAP RREKTKWVMH EYRLDGDFAR TKSF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-34 | 1 | 154 | 23 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-34 | 1 | 154 | 23 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-34 | 1 | 154 | 23 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-34 | 1 | 154 | 23 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-34 | 1 | 154 | 26 | 145 | NAC domain-containing protein 19 |
3ulx_A | 2e-34 | 1 | 154 | 21 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-34 | 1 | 154 | 23 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-34 | 1 | 154 | 23 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847205 | 2e-39 | KC847205.1 Gossypium hirsutum NAC domain protein NAC28 mRNA, complete cds. |
Publications
? help Back to Top |
- Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]
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