PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00746.1.p
Common NameLOC105960294, MIMGU_mgv1a018414mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 247aa    MW: 26353.9 Da    PI: 8.9446
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00746.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601322.5e-41531521100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++p+ +r da++slvyeA++r+rdPvyG++g i++lqqq+++l++e
  Migut.N00746.1.p  53 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPDLQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQTLQSE 145
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  Migut.N00746.1.p 146 LNAVRAE 152
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.67152153IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-4153150IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSREREGYEE IGKKLKKEID GGNNSSMGIR RNMVMGGPHP PGGAGTTLNT ITPCAACKLL  60
RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE VPDLQRADAA NSLVYEANVR  120
LRDPVYGCMG AISALQQQIQ TLQSELNAVR AEILRYKYRE AANTIIASTN AALGAVSVAE  180
LPQAPLTPTP SPPGPASAPP PRQQPPPPPP SIIVSSTSST PSSLFASPSR TASYNSISNN  240
HISYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-44461604118LOB family transfactor Ramosa2.1
5ly0_B4e-44461604118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00746.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839914.10.0PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T57e-80LBD15_ARATH; LOB domain-containing protein 15
SwissprotQ9AT619e-80LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A022S0331e-179A0A022S033_ERYGU; Uncharacterized protein
STRINGMigut.N00746.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-78LOB domain-containing protein 13
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]