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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.N00586.1.p |
Common Name | MIMGU_mgv1a004375mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
AP2 |
Protein Properties |
Length: 531aa MW: 58391.7 Da PI: 6.5952 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.N00586.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 44.4 | 4.2e-14 | 238 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g
Migut.N00586.1.p 238 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 297
57*******************666664478446**********99*************98 PP
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2 | AP2 | 50.1 | 6.9e-16 | 340 | 391 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Migut.N00586.1.p 340 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 391
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010080 | Biological Process | regulation of floral meristem growth |
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
GO:0035265 | Biological Process | organ growth |
GO:0048364 | Biological Process | root development |
GO:0060772 | Biological Process | leaf phyllotactic patterning |
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MAPDNNNNNW LSFSLSSMEM LNSSSSSSSQ QQPPVNNDSD QHQFYSSFAD NFYANGWPMI 60 QKAQDMYAEN QHLQEHGGGG GGGGSVFATA AYMQPPKLED FFAGGGDSTE TQDDSSLTHI 120 YDHHNHHHHH AAAYFSSNEH QDLKSTTYTG FQAFSANSGS EVDDSAFGGQ TQSSPIESPG 180 GDLVVYSHCP VAADAINNNA LSLGVNYNNN NKKAGAAIVA AESEGCKKIA DTFGQRTSIY 240 RGVTRHRWTG RYEAHLWDNS CRREGQARKG RQVYLGGYDK EDKAARAYDL AALKYWGATA 300 TTNFPISNYT KELEEMQHAT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR 360 VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GLNAVTNFEM NRYDVEAIAK SPLPVGGAAK 420 RLKLSLESND MDDNLNHPSS TAAATQTTTN ISFSTTVQHP GSALYPYGVP FDTTTAAGAP 480 FYHHNLFQHN MNHHQHHVGP TEAASTQPPM NHMMMQSPQE FFIWPHQSYN *
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Publications
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- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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