PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00500.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 435aa    MW: 46337.3 Da    PI: 8.3273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-064567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++Cgk F r  nL+ H r H
  Migut.N00500.1.p 45 FVCEICGKGFQRDQNLQLHKRGH 67
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-54467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.42E-84467No hitNo description
SMARTSM003550.0124567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5724567IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM0035522091121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4114147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.42E-8121147No hitNo description
SMARTSM00355110126146IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVKMENSSLL GDEPTRKKRN LPGMPDPDAE VIALSPKSLL ATNRFVCEIC GKGFQRDQNL  60
QLHKRGHNLP WKLRRQDTGG GDGVTARKRV YVCPESTCLH HDPARALGDL TGIKKHFCRK  120
HGEKKFDCER CPKRYAVRSD CKAHMKTCGT RDYRCDCGTL FSRRDSFVTH RAFCDALARE  180
STNIGSKTPV PPPPLTPTTS VLSPVLSSVQ SSVELPENPT TSHFQPPPEI AAVPASTATP  240
STSSNTSSGR VIPYSSRVFA SIYNASTSAE QPPALYSGHL PPSDHIPAID PISLSLSSSL  300
YGSQPLFSSS QSQNNPALSA TALLQKAAEM GATSSNSASF LRGMWLAAPP PPCQDNISTM  360
APTTFSCTPP NIKNFVKLED DNLVVFGNNE PTTVDFLGLG IGDAGEASSG GFSAFLSSIG  420
GGLDMNPGSA GSKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-28122186367Zinc finger protein JACKDAW
5b3h_F5e-28122186367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843034.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A022R1S91e-154A0A022R1S9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2