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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00491.1.p | ||||||||
Common Name | MIMGU_mgv1a024989mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9409.37 Da PI: 8.9781 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2.1e-08 | 8 | 55 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 WT+ + + da + + ++ W ar +g g+t +++k +++++l Migut.N00491.1.p 8 EWTEKQNKHFEDALATYNKDspeWWQNLARAVG-GKTVEEVKRHYRSLL 55 7********************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.001 | 4 | 59 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0011 | 5 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-5 | 8 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-5 | 8 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 8 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-11 | 8 | 62 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MSSNTNSEWT EKQNKHFEDA LATYNKDSPE WWQNLARAVG GKTVEEVKRH YRSLLRDIDQ 60 IENGKVPVPN YRDTTNGRRM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-24 | 9 | 77 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00491.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843030.1 | 1e-54 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 5e-29 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A022R1S2 | 7e-51 | A0A022R1S2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-31 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00491.1.p |
Publications ? help Back to Top | |||
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