PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 221aa MW: 23942.8 Da PI: 10.2924

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N00433.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.3e-11	152	197	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Migut.N00433.1.p 152 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKTLQ 197 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.062	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	149	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.29E-11	150	201	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	151	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-9	152	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MKNIKTGFSI TRGIGSYNAK GVAESGRSRL NPQLSFTGQQ PPSAASLSRI SEDHNNAGPS 60 DNDRRKSSRS YSAASGSGSG SGGGYGALGS WDQTHPIIFS VAQPNGAHNI DSQFHFSMSQ 120 EMASMDKLLN IPQDSVTCKI RAKRGFATHP RSIAERERRT RISGKLKKLQ DLVPNMDKQT 180 SYADMLDLAV QHIKTLQNQV QKLHTELDSC TCGCKKTRDS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N00433.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843217.1	1e-164	PREDICTED: transcription factor bHLH128
Swissprot	Q8H102	1e-54	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0H3YBT2	2e-89	A0A0H3YBT2_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.N00433.1.p	1e-164	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6455	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	2e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Migut.N00433.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]