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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N00155.2.p | ||||||||
Common Name | LOC105961629, MIMGU_mgv1a012924mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 26460 Da PI: 5.0287 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.3 | 2.9e-55 | 63 | 166 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+sfw+kq i+++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+een+rrtl+k+diaaa+trtdifd Migut.N00155.2.p 63 QLQSFWAKQyeeIDQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENRRRTLQKNDIAAAITRTDIFD 155 89******9888999****************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivpr++l Migut.N00155.2.p 156 FLVDIVPREDL 166 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.35E-33 | 32 | 157 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-21 | 85 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 86 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEQQGNGQTP YGVPPYQANQ ITRPPAPAGS TQTAPPPTQM APTQHQLAYP HINPQQQQQL 60 QQQLQSFWAK QYEEIDQVTD FKNHSLPLAR IKKIMKADED VRMISAEAPV IFARACEMFI 120 LELTLRSWNH TEENRRRTLQ KNDIAAAITR TDIFDFLVDI VPREDLRDEV LGSMPAGPVP 180 AEGLPYYYMQ PQVGGPPVGG PGMFVDPTMY GQQPPPRPYM TQQMWPQQPA PPGDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-61 | 71 | 163 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N00155.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841321.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_012841328.1 | 1e-172 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 6e-84 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A022RZX3 | 1e-171 | A0A022RZX3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00155.1.p | 1e-172 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-79 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N00155.2.p |
Entrez Gene | 105961629 |