PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00107.1.p
Common NameLOC105961294, MIMGU_mgv1a006413mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 446aa    MW: 47539.2 Da    PI: 7.9124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.7e-135176227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C +++rtG+C yGdrC+F+H+p
  Migut.N00107.1.p 51 DEPDCIYYLRTGFCGYGDRCRFNHPP 76
                      6899********************97 PP
2zf-CCCH37.83.3e-1297122227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C++++rtG Ck+G++Ck++H++
  Migut.N00107.1.p  97 GQPVCQYYMRTGMCKFGSSCKYHHPK 122
                       5789********************96 PP
3zf-CCCH33.38.4e-11143168227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++ ++G+Ck+G +CkF+H++
  Migut.N00107.1.p 143 GEKECSYYIKSGQCKFGVTCKFHHPQ 168
                       7899********************97 PP
4zf-CCCH36.67.6e-12297321327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C++++rtG Ck+G++Ck++H+p
  Migut.N00107.1.p 297 QPECQYYLRTGDCKFGSTCKYHHPP 321
                       799********************97 PP
5zf-CCCH35.41.8e-11343366326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +lC+++a++G C++G+ CkF H+
  Migut.N00107.1.p 343 APLCSHYAQSGLCRFGAACKFDHP 366
                       68*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3754977IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-105176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-65575IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0795123IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-997122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-798123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-4141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7143168IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699294322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5297321IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9297321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4300321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037340368IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6340367IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8343366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MERYSGTQAS EAMPVDPAAG WAAEGGETGL EEHMWQLGLG GGPESYPERP DEPDCIYYLR  60
TGFCGYGDRC RFNHPPDRSA AMGALRTSGD EYPERTGQPV CQYYMRTGMC KFGSSCKYHH  120
PKNGVGSPAP IPLNFYGYPL RPGEKECSYY IKSGQCKFGV TCKFHHPQPT GIQVPPPPSV  180
PAAMPTTAIY PNVHSSQQYG LITGNWPVTR PTMLPGSYVP GSYGSMLFPP GVVPIPGWTP  240
YPANTQPTFG AGPIYGMNQL SPSSTAYAGQ PYLPITSSSS SYGGPSSSSA LPERHGQPEC  300
QYYLRTGDCK FGSTCKYHHP PEWTASKTNF ILGPSGLPLR PGAPLCSHYA QSGLCRFGAA  360
CKFDHPLRSL ISYSPSASSL TDMPVAPYPV GSTNTTLAPS SSSSDLRPEN ILSGLSKDSL  420
SSQMSSSTNS SSASVGSTFS KSATK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00107.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840987.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-144C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A022RZS40.0A0A022RZS4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-122C3H family protein