PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N00106.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1151aa MW: 128703 Da PI: 9.1421 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.8e-10 | 44 | 79 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rWTteE ++da +++G++ Wk++a+ + +R+l+++ Migut.N00106.1.p 44 RWTTEELTHFYDAYRKYGKN-WKKVANAVR-TRSLEMV 79 9*****************99.*********.***9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-10 | 37 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.124 | 40 | 91 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0025 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 44 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-7 | 44 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.69E-5 | 44 | 79 | No hit | No description |
SMART | SM01135 | 1.6E-55 | 646 | 747 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.1E-32 | 646 | 746 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1151 aa Download sequence Send to blast |
MGPPRKSKSV YRRYTDEVSP CKDGDSAKRS NNRKRKSCNM LGPRWTTEEL THFYDAYRKY 60 GKNWKKVANA VRTRSLEMVD ALYKMNKAYL NLPHGTASLD GLIAMMTDQY SNMAGNDSDQ 120 ENNEGEGSSR KPQKRARGKV QPTTSKASND QFISHSQTAP SSYGCLSLLK KKRSEGSRPC 180 TVGKRTPRFP VSFSYENING EKYVSPTRQG LKLKANANDD EVAHQVAIAL AEASQRGDSP 240 QVYQTPIRRA ESVTLSPFRL GKGKHSLAEM ANTKILTADM DEEDLEGSPE AGTGELCRVK 300 SYRTESLSVV TVREKAKTLE AKKFEVDNNS ENYLYDIKEE CSGTEEGQRF GATRGKLYDA 360 KICRSSRQSQ RKKSKKVFLE KDEAHAFDAL QTLADLSLMM PMENEIDTKL QFKEEDVDHV 420 DESVSPEAPP MILQKQKHKH SGVKMKRYQP ISSLGAASTK TSNTGKASVF NVTSAPEEDQ 480 DPHQSILKTT RKKQKILLSK IKKTEAHPDI HLSKSPGIEA GDGGNNNKLR AKSKKSSQSS 540 TPNVMKSSEN SSSADLQKEA SESVQAAIQV PVVNQENLPT KVRSRRKMQL KKPQVLKDLN 600 CPDKISNDHS SPLTAMPHDT SFSLKEKLSS CLSNPCLRRW CTYEWFYSAI DYPWFAKKEF 660 DEYLCHVGLG NVPRLTRVEW GVIRSSLGKP RRFSEQFLKE EKEKLSQYRD SVRKHYTELR 720 KGVREGLPTD LARPLSVGQR VIAIHPKTRE IHDGSVLTVD HSRCRVQFDR HDLGVEFVKD 780 IDCMPLNPVE NMPALLGRQT RSIDKFLENS NELKINGRAH EAMKLFPGEM VDDPDGISQL 840 SPSANSASLL KQTKVASANA HVYMKIGSAE TASYPPTTFS QSSALAQIQA KEADVLALAE 900 LTRALDKKEA VIRELRHMND DVLENQKDDH SSLKDSEPFE KQYAAVLVQL KETNEQVSSA 960 LCCLRQRNTY QRNVPLAWPR SGIKFAVPGE EFSFDGFALR TYESGSHANE TIDSSRTKSR 1020 QMVDAAIQAM SSLKCREDNT LQKIDEAVDY VNDRLPSDDS SISAAHNPKS TSALELEAQI 1080 PSELISRCVA TLLMIQKCTE RQFPPSDVAR ILDSAVTSLK PCSSQNLPVY TEIQKCMGII 1140 RNQIMALIPT * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N00106.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840970.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3-like isoform X1 | ||||
TrEMBL | A0A4D8YXC6 | 0.0 | A0A4D8YXC6_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3312 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N00106.1.p |