PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01891.1.p
Common NameMIMGU_mgv1a001322mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93898.9 Da    PI: 6.1214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01891.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182179357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Migut.M01891.1.p 21 KYVRYTQEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 79
                      6789*****************************************************97 PP
2START152.24.4e-481733802204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W +++++ +++ +i  g  g+++
  Migut.M01891.1.p 173 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRISWFRDCRSLDVVSAIPAGngGTIE 264
                       68999*****************************************************.8888888888*****************999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++ +a+++l++ Rdf+++Ry+  l +g+++i+++S+ s +  p+    s +vR e+lpSg+li+p+++g+s +++v+h+d ++ +++++l
  Migut.M01891.1.p 265 LVYMQIYAPTTLASaRDFWTLRYTTNLDDGSLMICERSLASSTGGPTappASCFVRTEMLPSGYLIRPCEGGGSIIHIVDHIDFDSCSVPEVL 357
                       *****************************************999998888999**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k+++a+l++ +
  Migut.M01891.1.p 358 RPLYESSKILAQKMTMAALRHIR 380
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511680IPR001356Homeobox domain
SMARTSM003898.6E-151884IPR001356Homeobox domain
CDDcd000861.02E-151981No hitNo description
SuperFamilySSF466893.42E-152182IPR009057Homeodomain-like
PfamPF000465.6E-162179IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-182379IPR009057Homeodomain-like
CDDcd146867.33E-573112No hitNo description
PROSITE profilePS5084823.868163391IPR002913START domain
CDDcd088754.23E-68167383No hitNo description
Gene3DG3DSA:3.30.530.203.1E-21172377IPR023393START-like domain
SMARTSM002343.0E-41172382IPR002913START domain
SuperFamilySSF559618.65E-36173384No hitNo description
PfamPF018521.3E-45173380IPR002913START domain
PfamPF086703.0E-47710854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAHSTYRESN SKYQQQMDPS KYVRYTQEQV EALERVYAEC PKPSSLRRQQ LIRDCPILSN  60
IEPKQIKVWF QNRRCREKQR KESCRLQTVN RKLNAMNKLL MEENDRLQKQ VSQLVYENGF  120
MRTQLHTVST TTTDTSCDSV VMSGQQQHQQ QQQNPTSLHP LRDDHSPAGL LAIAEETLAE  180
FLGKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRI  240
SWFRDCRSLD VVSAIPAGNG GTIELVYMQI YAPTTLASAR DFWTLRYTTN LDDGSLMICE  300
RSLASSTGGP TAPPASCFVR TEMLPSGYLI RPCEGGGSII HIVDHIDFDS CSVPEVLRPL  360
YESSKILAQK MTMAALRHIR QIAQETNGEI QYSGGRQPAV LRSLSQRLCR GFNDAVNGFV  420
DDGWSIMGSD GVEDVTIAVN SSPSKFTGSQ YNNLSMLSTY GGVLCARASM LLQNVPPALL  480
VRFLREHRSE WADYGVDVYC ADSLKASPYA VPCAKTGGFP SSQVILPLAQ TVENEESLEV  540
VRLEGHAFSP EDIALSRDMY LLQLCSGIDE TTSGATCAQL VFAPIDESFG DDAPLLPSGF  600
RVIPLEPKSD GGPTANRTLD LASALEVGHG GARSSGEADV ANQNVRSVLT IAFQFTFENH  660
YRDSVVAMAR QYVRSIVGSV QRVAMAISPS PLHSSHLVPK SLPGSPEAVT LARWICRSFS  720
VHTGGELLQP DSPAGDAVLK QLWHHTDAIM CCSVKMNASA VFTFANQAGL DMLETTLVAL  780
QDIMLEKILD EAGRKILLSE FSKIMHQGFA YLPAGVCVSS MGRPVSYDQA IAWKVLNDED  840
SNHCLAFMFM NWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01891.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827547.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A022PY260.0A0A022PY26_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]