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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01535.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23182.1 Da PI: 7.9865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.8e-10 | 72 | 107 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++ + G++ W++Ia++++ gRt++++k+ w+++l Migut.M01535.1.p 72 TIINMHSSIGNK-WSKIASCLP-GRTDNEIKNVWNTHL 107 678999999***.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 7 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.42E-15 | 14 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-9 | 15 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.489 | 57 | 111 | IPR017930 | Myb domain |
CDD | cd00167 | 9.57E-6 | 71 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 71 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 71 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGKGRAPCCD RSKVRTGPWS TAEDLRLTTF IQKNGHTNWR ALPKHAELQA EVAQSPKPKR 60 EKRTLLPRRR QTIINMHSSI GNKWSKIASC LPGRTDNEIK NVWNTHLKKR LLITANDNII 120 TEAEQAQSSS PCSSISSHST TGEDQEMGRV ENPGSTEVIT SSTQDDNRRE LVENIPADID 180 VDLWELLNSL DPLDINIMYA ENRVLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-14 | 17 | 111 | 5 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01535.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086359.1 | 8e-51 | transcription factor MYB63 | ||||
TrEMBL | A0A022QI03 | 1e-103 | A0A022QI03_ERYGU; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 9e-48 | myb domain protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01535.1.p |