PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01489.1.p
Common NameLOC105968306, MIMGU_mgv1a025388mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 313aa    MW: 35388.6 Da    PI: 6.6275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01489.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.8e-52101401128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPt+eel+ +yL+kkv+ +++++ +vi+evd++k+ePwdL++  ++ ++ + +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Migut.M01489.1.p  10 VPPGFRFHPTEEELLYYYLRKKVSYEPIDF-DVIEEVDLNKLEPWDLKEkcRIGSGPQiDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 101
                       69****************************.9***************952455555557********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ + ++e +g++ktLvfy+grap+g+ktdW+mheyrl
  Migut.M01489.1.p 102 AIHLSnNSERIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 140
                       **99868888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-586167IPR003441NAC domain
PROSITE profilePS5100557.17210167IPR003441NAC domain
PfamPF023652.2E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAGNGGLTV PPGFRFHPTE EELLYYYLRK KVSYEPIDFD VIEEVDLNKL EPWDLKEKCR  60
IGSGPQIDWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNNSE RIGMRKTLVF  120
YTGRAPHGHK TDWIMHEYRL DHDHYSTTTS PLDIHEDGWV ICRVFKKKNQ SRGFNSSNVD  180
QEAEQDLLVP FPAVDGCTFG PNQAQPDNLY SSMHLPQLLS PESTVVAPPS FFSPFPLLTS  240
DSAGPSTTAA GGYIQQEKFS GDWSFLDKLL ATHQTMDHNT SRGHQFSPVA DLIPPAQRFP  300
FSCYGFEHDF SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-48817215170NO APICAL MERISTEM PROTEIN
1ut4_B3e-48817215170NO APICAL MERISTEM PROTEIN
1ut7_A3e-48817215170NO APICAL MERISTEM PROTEIN
1ut7_B3e-48817215170NO APICAL MERISTEM PROTEIN
3swm_A4e-48817218173NAC domain-containing protein 19
3swm_B4e-48817218173NAC domain-containing protein 19
3swm_C4e-48817218173NAC domain-containing protein 19
3swm_D4e-48817218173NAC domain-containing protein 19
3swp_A4e-48817218173NAC domain-containing protein 19
3swp_B4e-48817218173NAC domain-containing protein 19
3swp_C4e-48817218173NAC domain-containing protein 19
3swp_D4e-48817218173NAC domain-containing protein 19
4dul_A3e-48817215170NAC domain-containing protein 19
4dul_B3e-48817215170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01489.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848390.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ9MA171e-100SMB_ARATH; Protein SOMBRERO
TrEMBLA0A022QI400.0A0A022QI40_ERYGU; Uncharacterized protein
STRINGMigut.M01489.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-91NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]