![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M01289.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 216aa MW: 22687.1 Da PI: 4.6931 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 132.9 | 1e-41 | 53 | 144 | 4 | 95 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++++ P+an++rim++ lP naki++++ke++q+cv+efisf+t+ea+++cq e rk i++ddll a+a lGf++yv pl++yl+kyr + + Migut.M01289.1.p 53 TNHYAPLANITRIMRRGLPPNAKIGEESKEIMQDCVTEFISFITDEANERCQGEYRKMITADDLLAAMAALGFDNYVGPLTLYLNKYRAAAQ 144 78999***********************************************************************************8766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-38 | 51 | 150 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.26E-30 | 58 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-19 | 58 | 120 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.3E-13 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 3.3E-13 | 103 | 121 | No hit | No description |
PRINTS | PR00615 | 3.3E-13 | 122 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MENGGRSSNQ PEKNTTRATT SGIVIREGGG APAAPNAAAA DVNNPAEPAR RVTNHYAPLA 60 NITRIMRRGL PPNAKIGEES KEIMQDCVTE FISFITDEAN ERCQGEYRKM ITADDLLAAM 120 AALGFDNYVG PLTLYLNKYR AAAQELERGG PSTSHQARAV ENAHPPSPPP PVAAAAEVAV 180 DSDEYIGLTE FLNECIFGSR QNQGGGGGEG SSSGV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-37 | 51 | 140 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M01289.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848422.1 | 1e-157 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A022QGI3 | 1e-138 | A0A022QGI3_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01289.1.p | 1e-156 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 8e-31 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M01289.1.p |