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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M01119.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 634aa MW: 69708.5 Da PI: 5.9239 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.8e-07 | 269 | 289 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+a+ G+C G++C+F H Migut.M01119.1.p 269 ACEFYAK-GWCIKGNSCRFLHL 289 5******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.1E-6 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 269 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MLLKCRQIVR KSSPKCKSSI NIRDPTGGLC HNQPHSLSQH NQQKKAAVSA SSSEIDLMAS 60 HAAAAPPPSP KPSLSDNDYG SDEYEEIEEE IEVEEEVEVE EEIDSDEIEE DSTPVEENPD 120 DDTYLSMEID EDEEHINSGS VTQGIPVSDP KTDIIAELKN SGDVKTSKSG ERTSRDTNPK 180 TPFHNSAAVN HTKGSPSVGD LKTAMVITEA FRVKDSVILP VTAGTNQTVV EAAPNVIPMS 240 TRSHDAKIRV RDSPPTGERD GGNKKLRIAC EFYAKGWCIK GNSCRFLHLK DGPDAAVQKI 300 DVLDSEASSN ACIPPQQSGE NPKLKSETQK LVQSKDDKFS AGGSFTSHDN HHRPRIPSFE 360 EFISKKSELV KNDNLLTELP YTHSRRPLSF GSSSRNTNAS GTQKLPERGL EQRASVSSSF 420 HQSISLVPHS EPESRSRDPV SGDTVPAKHK TELSFNNWEP SVPFLPSHDI TRNLLVKENV 480 HNPIGDSISQ KNVNSDQGSS IKNAKVQSKS SEEEEKRMSS VNVVKVDGSM KSDETGLGGK 540 SDSQLQIESR VYRWFQSALV DFVKELLSPT WEKRLLSKDA YKLILKKSVD KILSTLQSHQ 600 IPNTAESTKL YLSVSEPKIV KLVEAYIEKH GKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M01119.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848868.1 | 0.0 | PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3004 | 21 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-19 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.M01119.1.p |