PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 150aa MW: 17574.2 Da PI: 9.9606

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01099.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	22	75	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q++ Le+ F +n+++ +++ +LA++lg++ rqV++W+qN+Ra++k Migut.M01099.1.p 22 RKKRLTENQVRLLESNFSSNNKLEPDRKCQLAAELGVPPRQVSIWYQNKRARDK 75 56779***********************************************99 PP
2	HD-ZIP_I/II	103.8	1.4e-33	22	113	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv+lLE++F++++kLep+rK +la eLg+ prqv +W+qn+RAR k++ lE d+ L+ +++++ ++n+rL+ +v+ L++el++ Migut.M01099.1.p 22 RKKRLTENQVRLLESNFSSNNKLEPDRKCQLAAELGVPPRQVSIWYQNKRARDKAQSLEIDHGNLQLRLESVLADNARLKGQVAMLKDELNR 113 8**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.613	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.08E-16	19	83	IPR009057	Homeodomain-like
SMART	SM00389	9.0E-15	19	81	IPR001356	Homeobox domain
CDD	cd00086	9.62E-13	20	78	No hit	No description
Pfam	PF00046	3.3E-15	22	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.3E-18	24	80	IPR009057	Homeodomain-like
PRINTS	PR00031	2.0E-5	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	57	73	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
PKMEELFQYT ETQKHQTITK SRKKRLTENQ VRLLESNFSS NNKLEPDRKC QLAAELGVPP 60 RQVSIWYQNK RARDKAQSLE IDHGNLQLRL ESVLADNARL KGQVAMLKDE LNRIQSAFLR 120 LLHRRVWIWF LIWLGDDSID SHYIVYGCP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01099.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848650.1	1e-78	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Swissprot	Q9FN29	3e-30	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A022QNI5	3e-77	A0A022QNI5_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-32	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Migut.M01099.1.p