PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00999.1.p
Common NameMIMGU_mgv1a020225mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 414aa    MW: 47562.7 Da    PI: 5.0564
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00999.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35161072102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye++ed++ ++++sws n++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll
  Migut.M00999.1.p  16 FLAKTYEMVEDPSSDSVVSWSWNNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFSNEDFVRGQPHLL 99 
                       9********************999****************************************9998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Migut.M00999.1.p 100 KNIHRRKP 107
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-385100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MMMDEAQCSS NSLPPFLAKT YEMVEDPSSD SVVSWSWNNK SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKVD PEQWEFSNED FVRGQPHLLK NIHRRKPVHS HSAPNLASLP  120
PLTEMERKSY KEDIEKLRND KESLHVELQR HKDEQQCLKS QMRILSERVQ NVENRHSNML  180
SSLAQTLHKP ASSLDLMPQG EVHDRKRRFP GNSYLCEETN MEDNNNNNNN NNNNNQRAAS  240
QRSTIEKLDA NSLLNFNKEL LEQLESSLMF WEKIVFDVGD GLVQRNSSSE LVESTSCGPS  300
PSISYTQLDL DVGIDMNSEP KTAFGLELQP RTEEQAVEVA TNVRTGVNDV FWEQFLTENP  360
GSNDSSEFQT GQAETESKKN ENKPSDRGMY WWNMKSVNNL AEQLGHLAPA ERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-23610519129Heat shock factor protein 1
5d5v_B7e-23610519129Heat shock factor protein 1
5d5v_D7e-23610519129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00999.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849282.10.0PREDICTED: heat stress transcription factor A-4c
TrEMBLA0A022QKL30.0A0A022QKL3_ERYGU; Uncharacterized protein
STRINGMigut.M00999.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-104heat shock transcription factor A4A