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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.M00986.1.p |
Common Name | LOC105968593, MIMGU_mgv1a012605mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 246aa MW: 28292.8 Da PI: 9.9861 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.M00986.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.9 | 1e-31 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
Migut.M00986.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 75
79***********************************************95 PP
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2 | K-box | 106.1 | 4.1e-35 | 95 | 190 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkk 97
+ s +ea+++ +qqe++kL+++i+nLq+++R++lGe+L+ L+l++L++Le+++e+++++iRskKnell+++ie++qk+ e el+++n++Lr+k
Migut.M00986.1.p 95 NGSISEANTQFYQQEASKLRAQINNLQNQNRNMLGESLGGLNLRDLKNLESKVERGISRIRSKKNELLFAEIEYMQKRqEIELHHNNQYLRAK 187
34489**********************************************************************9974679*********** PP
K-box 98 lee 100
++e
Migut.M00986.1.p 188 IAE 190
986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.5E-39 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.52 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-33 | 18 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.64E-45 | 18 | 92 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-25 | 101 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.235 | 103 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048366 | Biological Process | leaf development |
GO:0048440 | Biological Process | carpel development |
GO:0048443 | Biological Process | stamen development |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MEFQSDQSRE MSPQRKNGRG KIAIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYSNNSVKA TIERYKKASS DSPNNGSISE ANTQFYQQEA SKLRAQINNL 120 QNQNRNMLGE SLGGLNLRDL KNLESKVERG ISRIRSKKNE LLFAEIEYMQ KRQEIELHHN 180 NQYLRAKIAE TERAHQQNMN LMPGSSSFNL VQPQPFDARN YLQINGLQSN DHDYTVQDHP 240 PLQLV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-20 | 18 | 101 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-20 | 18 | 101 | 2 | 87 | MEF2C |
5f28_B | 4e-20 | 18 | 101 | 2 | 87 | MEF2C |
5f28_C | 4e-20 | 18 | 101 | 2 | 87 | MEF2C |
5f28_D | 4e-20 | 18 | 101 | 2 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |