![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M00891.2.p | ||||||||
Common Name | MIMGU_mgv1a005762mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 482aa MW: 50976.6 Da PI: 7.5724 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.4 | 3.1e-39 | 84 | 245 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg.. 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ++i el+ +s+ + ++ + e++ss+a++ + Migut.M00891.2.p 84 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAATSISELPPMTSPFP-DTpkqlSGEKRSSTAGS---Dql 172 689************************************************************944443.22222222222222222...123 PP TCP 89 .........................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 + ks+a+s++s++s+ s l+l++ esr kar+ra+er +ek + k++ Migut.M00891.2.p 173 gldsaevdmdggavgggdpnyshhhQLTKSSACSSNSENSKGSGLSLSRsESRIKARERAKERVAEKEKEKDN 245 4667777788888889999999985555555599999999999***********************9998854 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-41 | 85 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.686 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.68 | 222 | 241 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 482 aa Download sequence Send to blast |
MEVDEIPRKY PKISNGNRRP DSTKIGHALK MDEQYPDEEE EGENNRDAGG GGGVVRVGGV 60 DLGGGVGRFY GWPSSRIVRV SRASGGKDRH SKVLTSKGLR DRRVRLSVNT AIQFYDLQDR 120 LGYDQPSKAV EWLLKAAATS ISELPPMTSP FPDTPKQLSG EKRSSTAGSD QLGLDSAEVD 180 MDGGAVGGGD PNYSHHHQLT KSSACSSNSE NSKGSGLSLS RSESRIKARE RAKERVAEKE 240 KEKDNESPHV SSLNNPISQT TSFTELLSGG INSSTNGGGG GGGGSSVHQN PNMNESNFFL 300 KSPRQQWSST PMDYFNTGLL GPPGTRSGQM HLAANPFTSV ASQMFSVAGD HQPELHHFSF 360 VPDHLAPDVN AAAGGNNSSS GGGGGDYNLN FTISSSANSS GLAGFNRGTL QSNSSSPSML 420 PHLQRFSDGS PPSFFVSTAA PVENHHQFLS GYDAAGRLQL CYGDAHANNG RHSGQKGKGK 480 N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 91 | 145 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 91 | 145 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M00891.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842244.1 | 0.0 | PREDICTED: transcription factor TCP2-like isoform X1 | ||||
TrEMBL | A0A022QZI8 | 0.0 | A0A022QZI8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00891.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30210.2 | 3e-38 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M00891.2.p |