PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00750.1.p | ||||||||
Common Name | LOC105968013, MIMGU_mgv1a006656mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | TCP | ||||||||
Protein Properties | Length: 437aa MW: 47198.6 Da PI: 7.1083 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.3 | 1.2e-33 | 37 | 155 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg... 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak +i+el++++ ++++c +++ss +++ + ++ Migut.M00750.1.p 37 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDELAQLPPWHPTNCsapPPNNSSFEQH-EAAAaaa 128 79**************************************************************555555554421222222222.1111111 PP TCP 89 ..........................k 89 k Migut.M00750.1.p 129 eldhnhhqlglqhddlminsvsgassK 155 111112223333333334333333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-31 | 37 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.746 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MAESSHPPSR VRLRNGGGGG GGGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLA 60 AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KSSIDELAQL PPWHPTNCSA PPPNNSSFEQ 120 HEAAAAAAEL DHNHHQLGLQ HDDLMINSVS GASSKRSMAA MLGGGEDRGQ SSSFLPPSLD 180 SDAIADTIKS FFPMGASAVA SSCSAAMQQQ QFHSFPTPDF LQSRNTSHSQ DLKLSLHSFQ 240 DPILLHHHHN QQNPTHHNTE QTNQEQHIQG HVLLSGIPLG FDGTSGWGAE HHHQQAAELS 300 RFHRQQSWNS GGGGGGGDSG NYLFNSPSQP MLQQLLGQNQ NQNQNQFVSQ RGPLQSSNTP 360 SIRAWMDPSA TAISTTSTTT SSDQHYHHHL PIYPLGFGSG IGSFSGFNIP ARIQGDQEVH 420 DGYPDKPSSA SSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00750.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848057.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-96 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A022RYC6 | 0.0 | A0A022RYC6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00750.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-67 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00750.1.p |
Entrez Gene | 105968013 |