PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00487.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 354aa    MW: 40675.1 Da    PI: 6.7295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00487.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33219276259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk++ers edp+vv++tYeg+Hnh+
  Migut.M00487.1.p 219 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCGVKKRIERSFEDPSVVITTYEGQHNHH 276
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-34204278IPR003657WRKY domain
SuperFamilySSF1182905.23E-29210278IPR003657WRKY domain
PROSITE profilePS5081131.732213278IPR003657WRKY domain
SMARTSM007749.5E-40218277IPR003657WRKY domain
PfamPF031062.2E-26219276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSNEDNSSSY NINNPYYSFH QDHIHTITSS PQQGFEFPIT TTSHNNYNHF HDLYNNHHYH  60
HRHNQQPPPP PPLRNPNFDN RIDHSSSDGI MSFSNFLQVE VAEYNALSNA FDLSCSSSHD  120
QVAAINYDNN HNDDQLINIA ASAENPRTPN SSVSFSSQEA GLEDDYLKSD LQQKVCEQGD  180
HDHAKSENMK AKKKEVVKNK KERQVRFAFM TKSEVDNLED GYRWRKYGQK AVKNSPFPRS  240
YYRCTSQKCG VKKRIERSFE DPSVVITTYE GQHNHHSPAT IRGSAAALLG FSPPFQYNNY  300
IFPQDHNQMF FPSTNNPENH TVSNSTYNMH TNQISGHHQH LQDQLDQLPD HHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-272112791078Probable WRKY transcription factor 4
2lex_A3e-272112791078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00487.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846719.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ21e-48WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A022QQP60.0A0A022QQP6_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M00487.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-49WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]