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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00487.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 40675.1 Da PI: 6.7295 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.8 | 1.1e-33 | 219 | 276 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk++ers edp+vv++tYeg+Hnh+ Migut.M00487.1.p 219 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCGVKKRIERSFEDPSVVITTYEGQHNHH 276 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-34 | 204 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-29 | 210 | 278 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.732 | 213 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.5E-40 | 218 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-26 | 219 | 276 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MSNEDNSSSY NINNPYYSFH QDHIHTITSS PQQGFEFPIT TTSHNNYNHF HDLYNNHHYH 60 HRHNQQPPPP PPLRNPNFDN RIDHSSSDGI MSFSNFLQVE VAEYNALSNA FDLSCSSSHD 120 QVAAINYDNN HNDDQLINIA ASAENPRTPN SSVSFSSQEA GLEDDYLKSD LQQKVCEQGD 180 HDHAKSENMK AKKKEVVKNK KERQVRFAFM TKSEVDNLED GYRWRKYGQK AVKNSPFPRS 240 YYRCTSQKCG VKKRIERSFE DPSVVITTYE GQHNHHSPAT IRGSAAALLG FSPPFQYNNY 300 IFPQDHNQMF FPSTNNPENH TVSNSTYNMH TNQISGHHQH LQDQLDQLPD HHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 211 | 279 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 211 | 279 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00487.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846719.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 1e-48 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A022QQP6 | 0.0 | A0A022QQP6_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M00487.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 7e-49 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00487.1.p |
Publications ? help Back to Top | |||
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