PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00209.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 352aa    MW: 40443.9 Da    PI: 6.2995
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00209.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35121022101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye+++d+ +++++sw+ +gnsfvv+++ efa ++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+++ll
  Migut.M00209.1.p  12 FLVKTYEMVDDPLTNSVVSWNYTGNSFVVWNPPEFAADLLPKYFKHNNFSSFIRQLNTYGFRKVDPDQ---------WEFANEEFIQGQRHLL 95 
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Migut.M00209.1.p  96 KNIHRRK 102
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-38496IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-348101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEASTNNSTA PFLVKTYEMV DDPLTNSVVS WNYTGNSFVV WNPPEFAADL LPKYFKHNNF  60
SSFIRQLNTY GFRKVDPDQW EFANEEFIQG QRHLLKNIHR RKPIHSHSGQ VNALPLLTDS  120
ERRGFEKEIE KLRQEKLSLQ SKVDKHKHEN QGYEYRLKSL GHTLQNIDQR QRRLLATLDH  180
VFQNTQNKKR RPTFSFEENR SPSPSLPLLN LDAVEKLGSS LTFWEEFIYG VDKIPSSQGL  240
RDASYTTYVE SPAVSSICVD RDSSNGRSRL DVDMSAITKT RDVELDKDQD RDGGVACNVA  300
AAGGNDVFWQ QFLTEAEVES ERRDQGDDRM KDGGGFADEH KPWWNVEKLH Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-24310120129Heat shock factor protein 1
5d5v_B6e-24310120129Heat shock factor protein 1
5d5v_D6e-24310120129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00209.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844367.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A022QWC20.0A0A022QWC2_ERYGU; Uncharacterized protein
STRINGMigut.M00209.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-69HSF family protein