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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00164.1.p | ||||||||
Common Name | MIMGU_mgv11b024198mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HB-other | ||||||||
Protein Properties | Length: 170aa MW: 19812.2 Da PI: 6.5125 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 35 | 90 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ ++++++q++++eelF ++++++++r+eL+++lg++e q+k+WFqN+R+++k Migut.M00164.1.p 35 RKRHHRHSAHQIQRMEELFTDSPHLDKKQRRELSEELGMEELQIKFWFQNKRTQMK 90 6788899**********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.17E-17 | 22 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 26 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.05 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-14 | 34 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.12E-14 | 35 | 90 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 35 | 90 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.8E-5 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-5 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MNSNVSEGDD ASSFVNDEND NISICENSET QPQNRKRHHR HSAHQIQRME ELFTDSPHLD 60 KKQRRELSEE LGMEELQIKF WFQNKRTQMK GKYEHKQNTY LRAENEKLRE ENLKLGESLS 120 NACCLACGKM IDLGDLCQGE RRLRMENARL IEEIDRITTL AAKYIGRSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00164.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022140691.1 | 2e-53 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q0J9X2 | 2e-53 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A022RQT8 | 1e-122 | A0A022RQT8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13806 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 2e-42 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00164.1.p |
Publications ? help Back to Top | |||
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