PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L02034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 19940.9 Da PI: 5.9266 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.4e-11 | 50 | 92 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR+ri ++f L++l+P K++ +++Le+A++Y+k Lq Migut.L02034.1.p 50 AARQRRHRISERFKILQSLVPGG-----SKMDTVSMLEEAIQYVKFLQ 92 569******************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.056 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-15 | 47 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-13 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.89E-14 | 48 | 95 | No hit | No description |
SMART | SM00353 | 2.4E-14 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-8 | 51 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDSYSSLSNP SSCESSSVIA AAAAKEKEKE KKKNKGNGGG KLSTDPQSVA ARQRRHRISE 60 RFKILQSLVP GGSKMDTVSM LEEAIQYVKF LQNQIWLHHS MIDNITTTTT LNADPTNYNL 120 TVINNNNINN CSSSLLINDN NDNDDLHLPF DEDNYNYSSW EDEMYGAARR SDHHYYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L02034.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859333.1 | 5e-41 | PREDICTED: transcription factor bHLH140-like | ||||
TrEMBL | A0A022QGG5 | 2e-52 | A0A022QGG5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L02034.1.p | 1e-130 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11714 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-28 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Migut.L02034.1.p |