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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01952.1.p | ||||||||
Common Name | LOC105970145, MIMGU_mgv1a001935mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 737aa MW: 83811.5 Da PI: 6.5221 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 381.2 | 1.2e-116 | 363 | 734 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d ++a++lL+++++++sp gd +qRla+yf+ +L+arla+++s++ ka+ +++t+ ++ l+a+ ++ sP+ k+ Migut.L01952.1.p 363 LRTLLISCAQAVAADDCRNANELLKQIRQHSSPFGDGNQRLAHYFADGLEARLAGTGSQIHKAFVSKRTT---AADYLKAYYTYIASSPFRKI 452 6789************************************************************999999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s +++N+ Il +++r+H+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL ++A++++vpfe+n+ +a+ Migut.L01952.1.p 453 SAFATNKSILMKSGKATRLHVIDFGILYGFQWPTLIQRIADREGGPPKLRITGIDFPQPGfrPAEKIEETGRRLDHYAKTFNVPFEYNA-IAQ 544 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++e+L++++gE ++V + ++ ++llde+v es r++vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pr Migut.L01952.1.p 545 KWETIKIEDLKIEEGEFVVVICLYRTKNLLDETVVAESSRTTVLNLIRRINPNLFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANIPR 637 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+ er+ +Er ++g+e+ nv+aceg er+er et+++W+ r +aGF++vp++ ++++ a +r+++ + + ++e+s++l++gWk+r ++++ Migut.L01952.1.p 638 EKAERMLIERDIFGKEALNVIACEGWERVERPETYKQWQVRNLRAGFGQVPFEREIMERAIDKVRTFYHKDFVIDEDSQWLLMGWKGRIIYAI 730 ********************************************************************888********************** PP GRAS 371 SaWr 374 S+W+ Migut.L01952.1.p 731 SCWE 734 ***5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.88 | 337 | 714 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-114 | 363 | 734 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MDPRFHGPLN SSSNGFQLEN QPVPDFSNRK LVNAPRFEII YPDKKPVNRQ HRNQSAPLQQ 60 HHIEGLHLIP NQPFPNVPIP TSFIDVEDGY QDDCDFSDEV LRFIDQMLME EDMEDKTHML 120 QESLDFQAKE KSFYEVLGKK YPPSPKPDSS SLVNPYGEVG DDGYSYCNRY NSSTSSSNGS 180 GYLIDVVDPS WINSRVDYDA SLVNSSNSLH NIVNGFSDSP VSPLQDGDAY SESQLVWNFR 240 KGVDEASKFL ASGSKFMVNV GLNQEQQIHS ESRGKKNYHL ADRDLEEERI TKMPAVAAES 300 SIPIEEFDEA LLHSMGEGEK KFAVYRTNLR NEANKITQKN GQGSGGAKGR GKKNSRKKEV 360 IDLRTLLISC AQAVAADDCR NANELLKQIR QHSSPFGDGN QRLAHYFADG LEARLAGTGS 420 QIHKAFVSKR TTAADYLKAY YTYIASSPFR KISAFATNKS ILMKSGKATR LHVIDFGILY 480 GFQWPTLIQR IADREGGPPK LRITGIDFPQ PGFRPAEKIE ETGRRLDHYA KTFNVPFEYN 540 AIAQKWETIK IEDLKIEEGE FVVVICLYRT KNLLDETVVA ESSRTTVLNL IRRINPNLFI 600 HGIVNGAYSA PFFVTRFREV LFHFSALFDM LEANIPREKA ERMLIERDIF GKEALNVIAC 660 EGWERVERPE TYKQWQVRNL RAGFGQVPFE REIMERAIDK VRTFYHKDFV IDEDSQWLLM 720 GWKGRIIYAI SCWEPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-50 | 346 | 735 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-50 | 346 | 735 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01952.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850398.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A022QH71 | 0.0 | A0A022QH71_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01952.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01952.1.p |
Entrez Gene | 105970145 |