PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01754.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 377aa MW: 42656.1 Da PI: 5.8895 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 68 | 160 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k++++++d++l+++isw ++ nsfvv+d+ efa+ +Lp++Fkh+nf+SFvRQLn+YgF+k+++++ weF+ + F +g+++ll Migut.L01754.1.p 68 FLGKTFDLVDDPSLDSIISWGKKDNSFVVWDPIEFARMILPRHFKHRNFSSFVRQLNTYGFRKIDTDK---------WEFASEGFVRGQRHLL 151 99***************************************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+ks+ Migut.L01754.1.p 152 KNIQRRKSS 160 ******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.01E-34 | 64 | 157 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-56 | 64 | 157 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.7E-36 | 65 | 157 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-30 | 68 | 157 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 68 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 106 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 107 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 119 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDSDDNQKIH TPLSFPLPSS MASAFPEPPF SPFLGFGCFE PEFESKPEGL RALPHPLESL 60 YETPIPPFLG KTFDLVDDPS LDSIISWGKK DNSFVVWDPI EFARMILPRH FKHRNFSSFV 120 RQLNTYGFRK IDTDKWEFAS EGFVRGQRHL LKNIQRRKSS QPQQQIGSSS GEEGKAAALE 180 GEIERLRRER SSMMREVIEL QHQQRGTVER METVNEKLHT AEKRQKQMVS FLGKIFKNPS 240 LLSRIGQTRG QKSITTPKTM RKFVKHQGSE PIGENKVSGT KDVSFEVEDF AQDHYLKGKA 300 VLGPLPESMP EYFISFPDDV AKEKAAAASM TEVEDAIWSK GFESGAGIGS STNEFWSDVD 360 VWDIPLQADE GYPFNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 65 | 160 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 189 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01754.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836096.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
TrEMBL | A0A022RE10 | 0.0 | A0A022RE10_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01754.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8727 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-75 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01754.1.p |