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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01670.1.p | ||||||||
Common Name | LOC105956674, MIMGU_mgv1a017223mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 89aa MW: 9408.21 Da PI: 10.7312 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 136.4 | 6.5e-43 | 23 | 88 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 vea+GlnPGlivllvvgglll fl+gny+lyvyaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe Migut.L01670.1.p 23 GVEAQGLNPGLIVLLVVGGLLLSFLIGNYVLYVYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 88 58***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 7.8E-40 | 25 | 88 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MADAGFDRVP PSFDRVKNAA GGGVEAQGLN PGLIVLLVVG GLLLSFLIGN YVLYVYAQKT 60 LPPKKKKPIS KKKMKKERLK QGVSAPGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01670.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836001.1 | 6e-56 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | Q42337 | 3e-16 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A022REV5 | 1e-54 | A0A022REV5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01670.1.p | 2e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01670.1.p |
Entrez Gene | 105956674 |