PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01587.1.p | ||||||||
Common Name | MIMGU_mgv1a001526mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 804aa MW: 89873.8 Da PI: 8.9503 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.4e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++lt +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +d Migut.L01587.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELTARDLHDQTWTFRHIYRGQPKRHLLTTGWSIFVSNKRLIAGDAVLFIRD- 215 99*****************************954.4444.48************************************************55. PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ +l+++++r+ Migut.L01587.1.p 216 -ERSQLLLGIRRA 227 .555669999997 PP | |||||||
2 | Auxin_resp | 123 | 2.1e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++v++GmRf+m+fete+s rr++Gtv+gvsdld+vrW+nS+Wr+L+ Migut.L01587.1.p 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVTAGMRFRMMFETEESGVRRYMGTVTGVSDLDTVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-44 | 115 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-41 | 119 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.77E-22 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 2.8E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 126 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-35 | 252 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MKIPSNGFMA TAGEGEKKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKH 60 TDGIPSYPNL PSKLICMLRN VTLHADGETD EVYAQMTLQP VSKYDQEALL VSDIGLKHNR 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELTARD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSIFVS NKRLIAGDAV LFIRDERSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV TAGMRFRMMF 300 ETEESGVRRY MGTVTGVSDL DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVIAP 360 FYMCPPPFFR PKFPKHSGFP DDGSDLENIF KRGMPWNITD DFGIKDASSS IFPGLSLVQW 420 MSMQQNQQQS ALFPNMVSST PPQQNNTITS TNDPSKLLNF QSNNGNQQSQ QIVGQIQPSN 480 ITWAQQQQQI LHSPTNTQHN LQQQQQQQQQ QQQQQIMLPQ SSNSLNSDHN SQQASMYSQV 540 LQQQQQQQIL TGNAAQLQQT DPSANRATVP FTSLTQDMLY QQHIGQQPNL VQRPQQPQRP 600 PQIQHASPPS LSEQQLQLQL LQKLQQQHQQ QQHQLISPQS NSLEARVNQN QQAQQQNSLP 660 PPQRQSNGSC SSGPTPPVVQ SSSHFPVNQF PGPQKTPFLD RVRSIHTDGD APSCSNSPSK 720 SNFQFLRNQT ESASLLDNLI YPHASSNLVQ ESHHHSKMDK AAPDNLKFKG GGGAADHLDA 780 ASSGMQLRLC LRTVWMLRSR VFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 17 | 355 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01587.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848075.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A022QLZ5 | 0.0 | A0A022QLZ5_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01587.1.p |