PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01522.1.p
Common NameLOC105968131, MIMGU_mgv1a011465mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 282aa    MW: 31088.5 Da    PI: 8.0201
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT+eE+e l  +v+++G g Wk+I r          R+  ++k++w+++
  Migut.L01522.1.p  5 KQKWTAEEEEALRAGVAKHGVGKWKLIQRDPVfnqllFARSNIDLKDKWRNL 56
                      79****************************9999999779*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.113161IPR017930Myb domain
SuperFamilySSF466891.08E-15259IPR009057Homeodomain-like
SMARTSM007174.3E-7459IPR001005SANT/Myb domain
PfamPF002492.1E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13556IPR009057Homeodomain-like
CDDcd116602.22E-20656No hitNo description
SMARTSM005262.0E-13119184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.275121189IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-14121192IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-15121186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.4E-11124182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGVGKWKL IQRDPVFNQL LFARSNIDLK DKWRNLSVAN  60
GQGPRDKTKI TKPKANPVDA PATPLPAVAQ PSTAVVPSSQ DVVTTDVVML DPSKPLPEGN  120
NAAKYNAMIY EALSTLKEPN GSHSGAIATY IEQRYEVPQK FKRVLSSRLR RLVEQDKLEK  180
VENCYKMKGD DALVTKVPPV RQKETWPRQG QSIGYLGDTV EEAATAAAYK IAEAENKSFV  240
AAEAVKEAER VAMMAEEMEA LLQFATDCYE QCQRGEVVLF A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01522.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848206.10.0PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A022QK990.0A0A022QK99_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-46MYB_related family protein