PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01333.1.p | ||||||||
Common Name | MIMGU_mgv1a009792mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Whirly | ||||||||
Protein Properties | Length: 285aa MW: 31266.3 Da PI: 9.6279 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 209.6 | 3.4e-65 | 106 | 243 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 s+yk+kaal+v+++ p+f ldsg++kl+++G++ll++a+a ++r+ydW++kq+f+ls+te++++++l++++sceffhdp ++ s+eGkvrk+ Migut.L01333.1.p 106 SIYKGKAALTVEPRPPEFFPLDSGAFKLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVTEIGNIMSLGARDSCEFFHDPNKGRSDEGKVRKV 198 7******************************************************************************************** PP Whirly 94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 lk ePlpdGsG+f+nlsv+n+l++++e++++Pv+kaefavl s + Migut.L01333.1.p 199 LKAEPLPDGSGHFFNLSVQNKLTNVDENIYIPVTKAEFAVLVSSF 243 *****************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 9.6E-79 | 95 | 267 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.49E-77 | 99 | 283 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 7.7E-61 | 107 | 240 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MANIANLCAT TPVAGGGVSA INPLKLSSSS CSSAVPTSIF FSRRKDAAFV TAPRVNQSRS 60 ISFNVKSQYM TPQEQNHQQQ KAPPSYDSPF PSQPGQLPPR VYVGYSIYKG KAALTVEPRP 120 PEFFPLDSGA FKLSKEGFVL LQFAPASGVR QYDWSRKQVF SLSVTEIGNI MSLGARDSCE 180 FFHDPNKGRS DEGKVRKVLK AEPLPDGSGH FFNLSVQNKL TNVDENIYIP VTKAEFAVLV 240 SSFNFVIPYL LGWHTFANSI KPEDSNRVNS ANPRSGTVDY EWSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-115 | 95 | 283 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-115 | 95 | 283 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-115 | 95 | 283 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-115 | 95 | 283 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01333.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847743.1 | 0.0 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 1e-116 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A022QN47 | 0.0 | A0A022QN47_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01333.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7731 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-114 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01333.1.p |