PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01294.1.p | ||||||||
Common Name | MIMGU_mgv1a025639mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 239aa MW: 26195.2 Da PI: 8.6343 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 68.1 | 1.5e-21 | 4 | 50 | 16 | 58 |
ZF-HD_dimer 16 slGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRreve 58 +lGghavDGC+E+mp++++++t ++ lkCaACgCHRnFHRr+++ Migut.L01294.1.p 4 ALGGHAVDGCCEYMPHTTSSATsitdPTLLKCAACGCHRNFHRRQPD 50 58*************97766333555899***************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 17.244 | 1 | 48 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-12 | 4 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.5E-17 | 4 | 48 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-17 | 5 | 49 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.71E-18 | 117 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 118 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.6 | 128 | 192 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 7.4E-22 | 130 | 186 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MQPALGGHAV DGCCEYMPHT TSSATSITDP TLLKCAACGC HRNFHRRQPD FSTAAAAVIA 60 PPFLDFRLPA AAQPHPKRIS HSTSPESPHA APPPHHKLQL ALSTAVVVAA DEHHHHQEPV 120 TPTAENPSGR KRSRTKFSRE QKEKLHSFSE KLGWKIQKSD EAAAEEFCRE AGVAKSVLRV 180 WMHNHRNVSG KKDRDIIIIN NNGGKLINSS SENNNNGGNS SSENEEIRNI NKWQSFSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-20 | 131 | 187 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01294.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847537.1 | 1e-174 | PREDICTED: LOW QUALITY PROTEIN: zinc-finger homeodomain protein 10-like | ||||
TrEMBL | A0A022QN79 | 1e-174 | A0A022QN79_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L01294.1.p | 1e-177 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 6e-40 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01294.1.p |