PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 309aa MW: 35615.1 Da PI: 7.8182

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01269.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++ Migut.L01269.1.p 10 LPPGFRFHPTDEELIMHYLRNQATSKPCPV-SIIPEVDIYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIY 101 79**************************.89***********99999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl Migut.L01269.1.p 102 S-GSKYVGVKKALVFYKGKPPKGIKTDWIMHEYRL 135 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-66	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.475	10	162	IPR003441	NAC domain
Pfam	PF02365	1.2E-26	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGGKFINSNL PPGFRFHPTD EELIMHYLRN QATSKPCPVS IIPEVDIYKF DPWELPEKAE 60 FGENEWYFFT PRDRKYPNGV RPNRAAVSGY WKATGTDKAI YSGSKYVGVK KALVFYKGKP 120 PKGIKTDWIM HEYRLSESRS QTYKQNGSMR LDDWVLCRIY KKKNLGRISN YCDDDQQRVV 180 EESSFAHEIS NGGEIPQMPS MKLLLPRTCS LTLLRDFGYM GSISQRLLNE TCNSSYNVPF 240 NYIQEPVGNN NNNDNNHNNN NGNFSWAIDK NIHELGQQVQ QPCYTDDGDI KFQVNQTIFL 300 NNPMFELQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-73	9	164	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01269.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847550.1	0.0	PREDICTED: NAC transcription factor 29
Swissprot	K4BWV2	1e-118	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A022QQJ6	0.0	A0A022QQJ6_ERYGU; Uncharacterized protein
STRING	Migut.L01269.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-105	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Migut.L01269.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]