PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01158.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 32957.2 Da PI: 5.2462 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 1.9e-14 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P+ ++K + a+ L ++++Y++ Lq Migut.L01158.1.p 44 RSKHSVTEQRRRSKINERFQILRELIPNV----DQKRDTASFLLEVIQYVQFLQ 93 899*************************7....79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-22 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-18 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.317 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-12 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-15 | 44 | 97 | No hit | No description |
SMART | SM00353 | 1.4E-11 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MKSGKSHNEE EEEEEEDFST RKDATSSANN SKDGKNSDRA NAIRSKHSVT EQRRRSKINE 60 RFQILRELIP NVDQKRDTAS FLLEVIQYVQ FLQEKVQKYE GSYQPWSSEP TKLMPWRNSH 120 WRVQGFGGQP QTVKNGAGPA SAFPVRFDEN NVSAVPATLQ RDPPIETDQV RDPNANDGAY 180 VHTLLQVPPP PSDAQSTEYP SGSDALSGPD ELAIEGGTIS ISSVYSQGLL NSLTQALEST 240 GVDLSQASIS VQINLGKRAN TGPTPGISID KDHGIPIPSG TFQNASNGEN LDQAQKRRKI 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01158.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847749.1 | 0.0 | PREDICTED: transcription factor BIM2 | ||||
Swissprot | Q9CAA4 | 1e-100 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0H3Y8Y9 | 1e-141 | A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.L01158.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-99 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01158.1.p |
Publications ? help Back to Top | |||
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